Every modality faces to the same test
Throughput depends on two things: how many usable logical qubits a machine has, and how quickly it can perform logical quantum operations. Trapped ion and neutral atom systems process logical operations more slowly than other modalities, which limits how much work they can get through in a given amount of time.
One way to increase throughput is to add more qubits, allowing more operations to happen in parallel. But those additional qubits have to be added at a decreasing per-qubit cost to maintain the system’s price. And even with more qubits, the machine still has to finish commercially valuable problems within a useful timeframe.
Superconducting systems are fast, putting them in the same speed class as silicon spin qubits, so speed is not the main challenge. Their constraint shows up as cost, and photonic qubits have the same problem. As these systems scale, the cooling, control, and supporting infrastructure required to operate them also grows, pushing up the cost of running the machine.
The stake in the ground
The cost of a logical quantum operation does not flatter every approach. It falls when the hardware is cheap to build and operate, and easy to deploy, because both feed straight into the cost of every operation the machine runs. That is why these two numbers belong together. The cost to fabricate and operate a qubit ultimately sets the price of an operation, which determines what a customer pays to solve a problem. Win the first contest and you are positioned to win the second. Build custom hardware to scale and every extra dollar spent building the machine finds its way into the price of the answer.